From: QRNAS: software tool for refinement of nucleic acid structures
PDB ID | Clashscore | Bad backbone conf. [%] | Bad bonds [%] | Bad angles [%] | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | |
1A60 | 87.14 | 0.00 | 30.68 | 79.94 | 26.19 | 16.66 | 25.58 | 26.19 | 0.34 | 0.34 | 0.17 | 0.34 | 1.63 | 0.65 | 2.02 | 1.74 |
1B36 | 23.75 | 0.00 | 12.26 | 25.90 | 52.63 | 25.00 | 52.63 | 55.56 | 0.00 | 0.40 | 0.00 | 0.40 | 0.00 | 2.54 | 0.36 | 0.00 |
2L7D | 14.47 | 0.00 | – | 14.99 | 0.00 | 0.00 | – | 0.00 | 0.00 | 0.00 | – | 1.52 | 0.00 | 0.00 | – | 0.00 |
1P5M | 27.87 | 0.00 | 20.45 | 28.26 | 18.18 | 9.44 | 18.18 | 16.98 | 0.00 | 0.27 | 0.00 | 0.27 | 3.66 | 0.77 | 3.81 | 3.18 |
1YG3 | 85.46 | 0.00 | 30.94 | 91.22 | 64.29 | 53.85 | 64.29 | 69.23 | 2.58 | 0.55 | 2.56 | 3.29 | 4.44 | 4.40 | 4.58 | 4.75 |
2JYF | 66.93 | 0.00 | – | 64.75 | 9.30 | 12.20 | – | 9.76 | 0.00 | 0.35 | – | 0.35 | 0.00 | 1.00 | – | 0.35 |
2LC8 | 0.00 | 0.00 | 0.55 | 0.00 | 12.50 | 5.56 | 12.50 | 12.96 | 0.00 | 0.26 | 0.00 | 0.26 | 22.79 | 0.08 | 22.78 | 22.71 |
2 LU0 | 64.09 | 0.00 | 23.45 | 64.43 | 44.90 | 25.53 | 44.90 | 46.81 | 0.00 | 0.30 | 0.00 | 0.30 | 0.00 | 1.55 | 0.28 | 0.00 |
2M4Q | 23.09 | 0.00 | 16.13 | 21.38 | 7.41 | 0.00 | 7.41 | 8.00 | 0.00 | 0.57 | 0.00 | 0.57 | 0.00 | 0.73 | 4.07 | 4.21 |
2 M58 | 13.16 | 0.00 | 9.47 | 13.86 | 50.85 | 31.57 | 50.85 | 50.88 | 0.00 | 0.25 | 0.00 | 0.25 | 0.16 | 2.16 | 0.46 | 0.16 |
1BYX | 0.00 | 0.00 | – | 0.00 | 41.66 | 0.00 | – | 33.33 | 0.00 | 1.68 | – | 1.20 | 2.13 | 0.74 | – | 2.40 |
1DXN | 19.58 | 0.00 | 10.00 | 18.92 | 0.00 | 0.00 | 0.00 | 0.00 | 0.32 | 0.00 | 0.00 | 1.50 | 4.83 | 0.42 | 6.45 | 5.69 |