Skip to main content

Table 3 VAST Search results for gelatin binding region of human fibronectin.

From: Improving protein structure similarity searches using domain boundaries based on conserved sequence information

PDB Id and Chain

Structure Domain Hit

Sequence Domain Hit

Superfamily Member

Fold Group Member

SSEs Aligned

Residues Aligned

% Identity

2FN2 _

+

+

+

+

7 (5)

49 (39)

100% (100%)

1H8P A

+

+

+

+

5 (5)

34 (35)

41% (43%)

1PDC _

 

+

+

+

(5)

(27)

(48%)

1J7M A

 

+

+

+

(5)

(47)

(55%)

1MJD A

 

+

  

(4)

(17)

(12%)

  1. Scores for sequence based domains shown in parentheses.