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Table 2 VAST Search results for Topoisomerase-I from human.

From: Improving protein structure similarity searches using domain boundaries based on conserved sequence information

PDB Id and Chain

Structure Domain Hit

Sequence Domain Hit

Superfamily Member

Fold Group Member

SSEs Aligned

Residues Aligned

% Identity

1F34 B

+

   

4

32

13%

1HUM A

+

   

4

25

8%

1MGS A

+

   

4

24

13%

1ASS _

+

   

5

31

3%

2EOT _

+

   

4

22

0%

1EIG A

+

   

4

26

0%

1HFG A

+

   

4

23

22%

1AIH A

+

+

+

+

5 (9)

72 (126)

25% (9%)

1A41 _

 

+

+

+

(7)

(103)

(23%)

4CRX A

 

+

+

+

(9)

(139)

(12%)

  1. Scores for sequence based domains shown in parentheses.